1 Response_reg#1
7-68 aa · 62 aa · 79.5% of protein
Raw token
Response_reg:7:0.000000000000498:68:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4474_RS17385
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_013300305
ClassRRTypeCheYLength78 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300305#G4474_RS17385Stable P2CS identifier used across views.
GenomeGCF_013300305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length78 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage62 / 78 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa78 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:0.000000000000498:68:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300305::NZ_JAAINU010000015.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11464-11700Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_013300305::NZ_JAAINU010000015.1::G00008Context members
G4474_RS17385
Partner locus tags
G4474_RS17385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242998512.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4474_RS17385Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAAINU010000015.1Sequence record reported by the local genomic context database.
Genomic interval11 464-11 700 nt237 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 464-11 700 ntGCF_013300305::NZ_JAAINU010000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300305::NZ_JAAINU010000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINU010000015.1All displayed genes belong to this local TCS context.
Neighborhood span11 464-11 700 nt237 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 464 nt11 700 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4474_RS17385GCF_013300305#G4474_RS17385
RRCheYCurrent focus
11 464-11 700 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482385#DXB02_RS11540Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2212443
Simplified PFAM architecture for RROC_2212443
PFAM domain coverage: 146 / 157 aa (93.0%)
1 aa157 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[2-83] | Response_reg[86-149]
- Domain count: 2
- Matched identifier: RROC_2212443
- Positioned domains: HATPase_c 2-83 ; HATPase_c 2-83 ; Response_reg 86-149 ; Response_reg 86-149
Cluster members and taxonomy
Representative gene: GCF_003482385#DXB02_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300305
AssemblyASM1330030v1 · Contighaploid
Genome composition3 659 712 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 51 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key