1 HAMP#1
71-138 aa · 68 aa · 18.0% of protein
Raw token
HAMP:71:0.000000000165:138:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4474_RS14975
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300305
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300305#G4474_RS14975Stable P2CS identifier used across views.
GenomeGCF_013300305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 378 aa (63.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-221 aa · 64 aa · 16.9% of protein
Raw token
HisKA:158:0.0000000158:221:64:643 HATPase_c#3
271-377 aa · 107 aa · 28.3% of protein
Raw token
HATPase_c:271:6.74e-18:377:111:109- Raw architecture: HAMP:71:0.000000000165:138:68:69#HisKA:158:0.0000000158:221:64:64#HATPase_c:271:6.74e-18:377:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300305::NZ_JAAINU010000033.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6578-8376Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4474_15000RefSeq proteinWP_005427031.1
Context group ID
GCF_013300305::NZ_JAAINU010000033.1::G00035Context members
G4474_RS14975G4474_RS14980
Partner locus tags
G4474_RS14975G4474_RS14980
Partner old locus tags
G4474_15000G4474_15005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005427031.1Primary protein accession used for annex mappings.
UniProt accessionA5ZPI1Primary UniProt accession resolved in the annex database.
UniProt IDA5ZPI1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4474_RS14975Primary locus identifier stored in the genes table.
Old locus tagG4474_15000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINU010000033.1Sequence record reported by the local genomic context database.
Genomic interval6 578-7 714 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 578-8 376 ntGCF_013300305::NZ_JAAINU010000033.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300305::NZ_JAAINU010000033.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINU010000033.1All displayed genes belong to this local TCS context.
Neighborhood span6 578-8 376 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 578 nt8 376 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4474_RS14975GCF_013300305#G4474_RS14975
HKClassicCurrent focus
6 578-7 714 nt · Reverse (-)
G4474_RS14980GCF_013300305#G4474_RS14980
RROmpR
7 711-8 376 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS13355Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2626612
Simplified PFAM architecture for HKOC_2626612
PFAM domain coverage: 216 / 378 aa (57.1%)
1 aa378 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[88-134] | HisKA[159-222] | HATPase_c[272-376]
- Domain count: 3
- Matched identifier: HKOC_2626612
- Positioned domains: HAMP 88-134 ; HisKA 159-222 ; HATPase_c 272-376
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS13355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300305
AssemblyASM1330030v1 · Contighaploid
Genome composition3 659 712 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 51 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key