1 Response_reg#1
4-83 aa · 80 aa · 69.6% of protein
Raw token
Response_reg:4:0.000000000000517:83:81:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4474_RS14245
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_013300305
ClassRRTypeCheYLength115 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300305#G4474_RS14245Stable P2CS identifier used across views.
GenomeGCF_013300305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length115 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage80 / 115 aa (69.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa115 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.000000000000517:83:81:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300305::NZ_JAAINU010000027.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39813-40160Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4474_14275RefSeq proteinWP_173815517.1
Context group ID
GCF_013300305::NZ_JAAINU010000027.1::G00024Context members
G4474_RS14245
Partner locus tags
G4474_RS14245
Partner old locus tags
G4474_14275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815517.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4474_RS14245Primary locus identifier stored in the genes table.
Old locus tagG4474_14275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINU010000027.1Sequence record reported by the local genomic context database.
Genomic interval39 813-40 160 nt348 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 813-40 160 ntGCF_013300305::NZ_JAAINU010000027.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300305::NZ_JAAINU010000027.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINU010000027.1All displayed genes belong to this local TCS context.
Neighborhood span39 813-40 160 nt348 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 813 nt40 160 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4474_RS14245GCF_013300305#G4474_RS14245
RRCheYCurrent focus
39 813-40 160 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS14585Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2465481
Simplified PFAM architecture for RROC_2465481
PFAM domain coverage: 85 / 115 aa (73.9%)
1 aa115 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-88]
- Domain count: 1
- Matched identifier: RROC_2465481
- Positioned domains: Response_reg 4-88
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS14585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300305
AssemblyASM1330030v1 · Contighaploid
Genome composition3 659 712 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 51 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key