1 HisKA#1
228-294 aa · 67 aa · 14.8% of protein
Raw token
HisKA:228:0.000000000223:294:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4474_RS14210
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300305
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300305#G4474_RS14210Stable P2CS identifier used across views.
GenomeGCF_013300305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 454 aa (39.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-454 aa · 112 aa · 24.7% of protein
Raw token
HATPase_c:343:1.68e-19:454:112:109- Raw architecture: HisKA:228:0.000000000223:294:67:64#HATPase_c:343:1.68e-19:454:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300305::NZ_JAAINU010000027.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34502-36572Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4474_14240RefSeq proteinWP_173815512.1
Context group ID
GCF_013300305::NZ_JAAINU010000027.1::G00023Context members
G4474_RS14210G4474_RS14215
Partner locus tags
G4474_RS14210G4474_RS14215
Partner old locus tags
G4474_14240G4474_14245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815512.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4474_RS14210Primary locus identifier stored in the genes table.
Old locus tagG4474_14240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINU010000027.1Sequence record reported by the local genomic context database.
Genomic interval34 502-35 866 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 502-36 572 ntGCF_013300305::NZ_JAAINU010000027.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300305::NZ_JAAINU010000027.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINU010000027.1All displayed genes belong to this local TCS context.
Neighborhood span34 502-36 572 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 502 nt36 572 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4474_RS14210GCF_013300305#G4474_RS14210
HKClassicCurrent focus
34 502-35 866 nt · Reverse (-)
G4474_RS14215GCF_013300305#G4474_RS14215
RROmpR
35 871-36 572 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS14550Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1916747
Simplified PFAM architecture for HKOC_1916747
PFAM domain coverage: 175 / 454 aa (38.5%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[229-293] | HATPase_c[343-452]
- Domain count: 2
- Matched identifier: HKOC_1916747
- Positioned domains: HisKA 229-293 ; HATPase_c 343-452
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS14550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300305
AssemblyASM1330030v1 · Contighaploid
Genome composition3 659 712 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 51 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key