1 Response_reg#1
7-123 aa · 117 aa · 84.8% of protein
Raw token
Response_reg:7:5.63e-28:123:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4474_RS07725
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_013300305
ClassRRTypeCheYLength138 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300305#G4474_RS07725Stable P2CS identifier used across views.
GenomeGCF_013300305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length138 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 138 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa138 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:5.63e-28:123:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300305::NZ_JAAINU010000008.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119593-121787Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4474_07745RefSeq proteinWP_147397731.1
Context group ID
GCF_013300305::NZ_JAAINU010000008.1::G00068Context members
G4474_RS07725G4474_RS07730
Partner locus tags
G4474_RS07725G4474_RS07730
Partner old locus tags
G4474_07745G4474_07750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147397731.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4474_RS07725Primary locus identifier stored in the genes table.
Old locus tagG4474_07745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINU010000008.1Sequence record reported by the local genomic context database.
Genomic interval119 593-120 009 nt417 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 593-121 787 ntGCF_013300305::NZ_JAAINU010000008.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300305::NZ_JAAINU010000008.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINU010000008.1All displayed genes belong to this local TCS context.
Neighborhood span119 593-121 787 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 593 nt121 787 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4474_RS07725GCF_013300305#G4474_RS07725
RRCheYCurrent focus
119 593-120 009 nt · Reverse (-)
G4474_RS07730GCF_013300305#G4474_RS07730
HKClassic
120 123-121 787 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS07240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2274595
Simplified PFAM architecture for RROC_2274595
PFAM domain coverage: 116 / 138 aa (84.1%)
1 aa138 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-122]
- Domain count: 1
- Matched identifier: RROC_2274595
- Positioned domains: Response_reg 7-122 ; Response_reg 7-122
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS07240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300305
AssemblyASM1330030v1 · Contighaploid
Genome composition3 659 712 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 51 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key