1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:1.14e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4474_RS03960
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013300305
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300305#G4474_RS03960Stable P2CS identifier used across views.
GenomeGCF_013300305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:1.36e-36:227:77:77- Raw architecture: Response_reg:5:1.14e-38:114:111:111#Trans_reg_C:151:1.36e-36:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300305::NZ_JAAINU010000003.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117461-119573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4474_03965RefSeq proteinWP_022462209.1
Context group ID
GCF_013300305::NZ_JAAINU010000003.1::G00038Context members
G4474_RS03955G4474_RS03960
Partner locus tags
G4474_RS03955G4474_RS03960
Partner old locus tags
G4474_03960G4474_03965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022462209.1Primary protein accession used for annex mappings.
UniProt accessionA0A939CGY6Primary UniProt accession resolved in the annex database.
UniProt IDA0A939CGY6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4474_RS03960Primary locus identifier stored in the genes table.
Old locus tagG4474_03965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINU010000003.1Sequence record reported by the local genomic context database.
Genomic interval118 884-119 573 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 461-119 573 ntGCF_013300305::NZ_JAAINU010000003.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300305::NZ_JAAINU010000003.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINU010000003.1All displayed genes belong to this local TCS context.
Neighborhood span117 461-119 573 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 461 nt119 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4474_RS03955GCF_013300305#G4474_RS03955
HKClassic
117 461-118 939 nt · Reverse (-)
G4474_RS03960GCF_013300305#G4474_RS03960
RROmpRCurrent focus
118 884-119 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS05295Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1260971
Simplified PFAM architecture for RROC_1260971
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1260971
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS05295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300305
AssemblyASM1330030v1 · Contighaploid
Genome composition3 659 712 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 51 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key