1 His_kinase#1
357-434 aa · 78 aa · 13.8% of protein
Raw token
His_kinase:357:1.13e-26:434:78:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4456_RS01070
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300285
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300285#G4456_RS01070Stable P2CS identifier used across views.
GenomeGCF_013300285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 565 aa (33.6%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
454-565 aa · 112 aa · 19.8% of protein
Raw token
HATPase_c:454:0.000000852:565:115:109- Raw architecture: His_kinase:357:1.13e-26:434:78:80#HATPase_c:454:0.000000852:565:115:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300285::NZ_JAAINS010000001.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span214560-216257Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4456_01075RefSeq proteinWP_173839810.1
Context group ID
GCF_013300285::NZ_JAAINS010000001.1::G00020Context members
G4456_RS01070
Partner locus tags
G4456_RS01070
Partner old locus tags
G4456_01075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173839810.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4456_RS01070Primary locus identifier stored in the genes table.
Old locus tagG4456_01075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINS010000001.1Sequence record reported by the local genomic context database.
Genomic interval214 560-216 257 nt1 698 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span214 560-216 257 ntGCF_013300285::NZ_JAAINS010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300285::NZ_JAAINS010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span214 560-216 257 nt1 698 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
214 560 nt216 257 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4456_RS01070GCF_013300285#G4456_RS01070
HKClassicCurrent focus
214 560-216 257 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460685#DXA55_RS08865Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1143282
Simplified PFAM architecture for HKOC_1143282
PFAM domain coverage: 188 / 584 aa (32.2%)
1 aa584 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[376-454] | HATPase_c[475-583]
- Domain count: 2
- Matched identifier: HKOC_1143282
- Positioned domains: His_kinase 376-454 ; HATPase_c 475-583
Cluster members and taxonomy
Representative gene: GCF_003460685#DXA55_RS08865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300285
AssemblyASM1330028v1 · Contighaploid
Genome composition3 640 217 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key