1 Response_reg#1
4-114 aa · 111 aa · 48.3% of protein
Raw token
Response_reg:4:3.91e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A95_RS08755
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013300205
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300205#G5A95_RS08755Stable P2CS identifier used across views.
GenomeGCF_013300205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 230 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:148:4.09e-28:224:78:77- Raw architecture: Response_reg:4:3.91e-32:114:111:111#Trans_reg_C:148:4.09e-28:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300205::NZ_JAAIUE010000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13644-15364Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A95_08775RefSeq proteinWP_021632060.1
Context group ID
GCF_013300205::NZ_JAAIUE010000010.1::G00002Context members
G5A95_RS08755G5A95_RS08760
Partner locus tags
G5A95_RS08755G5A95_RS08760
Partner old locus tags
G5A95_08775G5A95_08780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021632060.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A95_RS08755Primary locus identifier stored in the genes table.
Old locus tagG5A95_08775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUE010000010.1Sequence record reported by the local genomic context database.
Genomic interval13 644-14 336 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 644-15 364 ntGCF_013300205::NZ_JAAIUE010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300205::NZ_JAAIUE010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUE010000010.1All displayed genes belong to this local TCS context.
Neighborhood span13 644-15 364 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 644 nt15 364 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A95_RS08755GCF_013300205#G5A95_RS08755
RROmpRCurrent focus
13 644-14 336 nt · Forward (+)
G5A95_RS08760GCF_013300205#G5A95_RS08760
HKClassic
14 333-15 364 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS09860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1205250
Simplified PFAM architecture for RROC_1205250
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1205250
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS09860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300205
AssemblyASM1330020v1 · Contighaploid
Genome composition3 543 439 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 96 · HK 49 · RR 45CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key