1 Response_reg#1
6-116 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:6:7.53e-33:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4461_RS03390
Response regulator OmpR family
Blautia wexlerae · GCF_013299995
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299995#G4461_RS03390Stable P2CS identifier used across views.
GenomeGCF_013299995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:149:4.74e-32:222:77:77- Raw architecture: Response_reg:6:7.53e-33:116:112:111#Trans_reg_C:149:4.74e-32:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299995::NZ_JAAINE010000006.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52658-54879Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4461_03385RefSeq proteinWP_020993968.1
Context group ID
GCF_013299995::NZ_JAAINE010000006.1::G00059Context members
G4461_RS03390G4461_RS03395
Partner locus tags
G4461_RS03390G4461_RS03395
Partner old locus tags
G4461_03385G4461_03390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020993968.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NZ16Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NZ16_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4461_RS03390Primary locus identifier stored in the genes table.
Old locus tagG4461_03385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINE010000006.1Sequence record reported by the local genomic context database.
Genomic interval52 658-53 338 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 658-54 879 ntGCF_013299995::NZ_JAAINE010000006.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299995::NZ_JAAINE010000006.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINE010000006.1All displayed genes belong to this local TCS context.
Neighborhood span52 658-54 879 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 658 nt54 879 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4461_RS03390GCF_013299995#G4461_RS03390
RROmpRCurrent focus
52 658-53 338 nt · Forward (+)
G4461_RS03395GCF_013299995#G4461_RS03395
HKClassic
53 335-54 879 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424085#G599_RS0115190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410740
Simplified PFAM architecture for RROC_1410740
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1410740
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000424085#G599_RS0115190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013299995
AssemblyASM1329999v1 · Contighaploid
Genome composition4 309 910 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 127 · HK 62 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key