1 Response_reg#1
4-123 aa · 120 aa · 50.0% of protein
Raw token
Response_reg:4:1.37e-18:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4366_RS12985
Response regulator LytTR family
Coprococcus comes · GCF_013299755
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013299755#G4366_RS12985Stable P2CS identifier used across views.
GenomeGCF_013299755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 240 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-219 aa · 74 aa · 30.8% of protein
Raw token
LytTR:146:0.00000000113:219:77:98- Raw architecture: Response_reg:4:1.37e-18:123:121:111#LytTR:146:0.00000000113:219:77:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013299755::NZ_JAAIMN010000022.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10968-11690Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4366_13055RefSeq proteinWP_173690672.1
Context group ID
GCF_013299755::NZ_JAAIMN010000022.1::G00022Context members
G4366_RS12985
Partner locus tags
G4366_RS12985
Partner old locus tags
G4366_13055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690672.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4366_RS12985Primary locus identifier stored in the genes table.
Old locus tagG4366_13055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMN010000022.1Sequence record reported by the local genomic context database.
Genomic interval10 968-11 690 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 968-11 690 ntGCF_013299755::NZ_JAAIMN010000022.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299755::NZ_JAAIMN010000022.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMN010000022.1All displayed genes belong to this local TCS context.
Neighborhood span10 968-11 690 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 968 nt11 690 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4366_RS12985GCF_013299755#G4366_RS12985
RRLytTRCurrent focus
10 968-11 690 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS12985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0891407
Simplified PFAM architecture for RROC_0891407
PFAM domain coverage: 205 / 240 aa (85.4%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[146-231]
- Domain count: 2
- Matched identifier: RROC_0891407
- Positioned domains: Response_reg 4-122 ; LytTR 146-231
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS12985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299755
AssemblyASM1329975v1 · Contighaploid
Genome composition3 230 682 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key