1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000275:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4366_RS10175
Histidine kinase, Classic
Coprococcus comes · GCF_013299755
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299755#G4366_RS10175Stable P2CS identifier used across views.
GenomeGCF_013299755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 305 aa (72.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-149 aa · 65 aa · 21.3% of protein
Raw token
HisKA:85:0.0000000379:149:65:643 HATPase_c#3
202-305 aa · 104 aa · 34.1% of protein
Raw token
HATPase_c:202:2.41e-29:305:104:109- Raw architecture: HAMP:4:0.0000275:56:53:69#HisKA:85:0.0000000379:149:65:64#HATPase_c:202:2.41e-29:305:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299755::NZ_JAAIMN010000013.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16321-17936Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4366_10210RefSeq proteinWP_173690488.1
Context group ID
GCF_013299755::NZ_JAAIMN010000013.1::G00008Context members
G4366_RS10175G4366_RS10180
Partner locus tags
G4366_RS10175G4366_RS10180
Partner old locus tags
G4366_10210G4366_10215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4366_RS10175Primary locus identifier stored in the genes table.
Old locus tagG4366_10210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMN010000013.1Sequence record reported by the local genomic context database.
Genomic interval16 321-17 238 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 321-17 936 ntGCF_013299755::NZ_JAAIMN010000013.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299755::NZ_JAAIMN010000013.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMN010000013.1All displayed genes belong to this local TCS context.
Neighborhood span16 321-17 936 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 321 nt17 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4366_RS10175GCF_013299755#G4366_RS10175
HKClassicCurrent focus
16 321-17 238 nt · Reverse (-)
G4366_RS10180GCF_013299755#G4366_RS10180
RROmpR
17 244-17 936 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS10175The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882487
Simplified PFAM architecture for HKOC_2882487
PFAM domain coverage: 169 / 305 aa (55.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-147] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882487
- Positioned domains: HisKA 85-147 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS10175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299755
AssemblyASM1329975v1 · Contighaploid
Genome composition3 230 682 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key