1 Response_reg#1
7-110 aa · 104 aa · 21.0% of protein
Raw token
Response_reg:7:2.48e-25:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4366_RS09520
Response regulator RpfG family
Coprococcus comes · GCF_013299755
ClassRRTypeRpfGLength496 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_013299755#G4366_RS09520Stable P2CS identifier used across views.
GenomeGCF_013299755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 496 aa (42.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation2 items
2 HD#2
195-299 aa · 105 aa · 21.2% of protein
Raw token
HD:195:0.00000000000445:299:105:110- Raw architecture: Response_reg:7:2.48e-25:110:105:111#HD:195:0.00000000000445:299:105:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_013299755::NZ_JAAIMN010000011.1::G00004
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span60831-67712Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4366_09540RefSeq proteinWP_173690398.1
Context group ID
GCF_013299755::NZ_JAAIMN010000011.1::G00004Context members
G4366_RS09505G4366_RS09510G4366_RS09520
Partner locus tags
G4366_RS09505G4366_RS09510G4366_RS09520
Partner old locus tags
G4366_09525G4366_09530G4366_09540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690398.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4366_RS09520Primary locus identifier stored in the genes table.
Old locus tagG4366_09540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMN010000011.1Sequence record reported by the local genomic context database.
Genomic interval66 222-67 712 nt1 491 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 831-67 712 ntGCF_013299755::NZ_JAAIMN010000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299755::NZ_JAAIMN010000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMN010000011.1All displayed genes belong to this local TCS context.
Neighborhood span60 831-67 712 nt6 882 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 831 nt67 712 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
G4366_RS09505GCF_013299755#G4366_RS09505
HKHybrid
60 831-62 903 nt · Reverse (-)
G4366_RS09510GCF_013299755#G4366_RS09510
HKHybrid
62 999-65 857 nt · Reverse (-)
G4366_RS09520GCF_013299755#G4366_RS09520
RRRpfGCurrent focus
66 222-67 712 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS09520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0162711
Simplified PFAM architecture for RROC_0162711
PFAM domain coverage: 246 / 496 aa (49.6%)
1 aa496 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[186-320]
- Domain count: 2
- Matched identifier: RROC_0162711
- Positioned domains: Response_reg 7-117 ; HD_5 186-320
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS09520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299755
AssemblyASM1329975v1 · Contighaploid
Genome composition3 230 682 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key