1 HisKA#1
265-330 aa · 66 aa · 10.3% of protein
Raw token
HisKA:265:6.55e-18:330:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4366_RS09495
Histidine kinase, Hybrid
Coprococcus comes · GCF_013299755
ClassHKTypeHybridLength640 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299755#G4366_RS09495Stable P2CS identifier used across views.
GenomeGCF_013299755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length640 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage292 / 640 aa (45.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa640 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
384-495 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:384:3.28e-29:495:112:1093 Response_reg#3
520-633 aa · 114 aa · 17.8% of protein
Raw token
Response_reg:520:7.74e-29:633:114:111- Raw architecture: HisKA:265:6.55e-18:330:66:64#HATPase_c:384:3.28e-29:495:112:109#Response_reg:520:7.74e-29:633:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299755::NZ_JAAIMN010000011.1::G00003
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span54914-60268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4366_09515RefSeq proteinWP_173690402.1
Context group ID
GCF_013299755::NZ_JAAIMN010000011.1::G00003Context members
G4366_RS09495G4366_RS09500
Partner locus tags
G4366_RS09495G4366_RS09500
Partner old locus tags
G4366_09515G4366_09520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690402.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4366_RS09495Primary locus identifier stored in the genes table.
Old locus tagG4366_09515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMN010000011.1Sequence record reported by the local genomic context database.
Genomic interval54 914-56 836 nt1 923 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 914-60 268 ntGCF_013299755::NZ_JAAIMN010000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299755::NZ_JAAIMN010000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMN010000011.1All displayed genes belong to this local TCS context.
Neighborhood span54 914-60 268 nt5 355 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 914 nt60 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4366_RS09495GCF_013299755#G4366_RS09495
HKHybridCurrent focus
54 914-56 836 nt · Reverse (-)
G4366_RS09500GCF_013299755#G4366_RS09500
HKHybrid
57 062-60 268 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS09495The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0922057
Simplified PFAM architecture for HKOC_0922057
PFAM domain coverage: 295 / 640 aa (46.1%)
1 aa640 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[265-330] | HATPase_c[381-494] | Response_reg[520-634]
- Domain count: 3
- Matched identifier: HKOC_0922057
- Positioned domains: HisKA 265-330 ; HATPase_c 381-494 ; Response_reg 520-634
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS09495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299755
AssemblyASM1329975v1 · Contighaploid
Genome composition3 230 682 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key