1 Response_reg#1
7-116 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:7:7.01e-29:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4366_RS08490
Response regulator OmpR family
Coprococcus comes · GCF_013299755
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299755#G4366_RS08490Stable P2CS identifier used across views.
GenomeGCF_013299755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:152:1.57e-24:228:77:77- Raw architecture: Response_reg:7:7.01e-29:116:111:111#Trans_reg_C:152:1.57e-24:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299755::NZ_JAAIMN010000009.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69265-71023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4366_08510RefSeq proteinWP_173690322.1
Context group ID
GCF_013299755::NZ_JAAIMN010000009.1::G00052Context members
G4366_RS08490G4366_RS08495
Partner locus tags
G4366_RS08490G4366_RS08495
Partner old locus tags
G4366_08510G4366_08515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690322.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4366_RS08490Primary locus identifier stored in the genes table.
Old locus tagG4366_08510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMN010000009.1Sequence record reported by the local genomic context database.
Genomic interval69 265-69 966 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 265-71 023 ntGCF_013299755::NZ_JAAIMN010000009.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299755::NZ_JAAIMN010000009.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMN010000009.1All displayed genes belong to this local TCS context.
Neighborhood span69 265-71 023 nt1 759 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 265 nt71 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4366_RS08490GCF_013299755#G4366_RS08490
RROmpRCurrent focus
69 265-69 966 nt · Reverse (-)
G4366_RS08495GCF_013299755#G4366_RS08495
HKClassic
69 956-71 023 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS08490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1095353
Simplified PFAM architecture for RROC_1095353
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1095353
- Positioned domains: Response_reg 7-116 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS08490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299755
AssemblyASM1329975v1 · Contighaploid
Genome composition3 230 682 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key