1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:7.93e-28:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4366_RS00825
Response regulator OmpR family
Coprococcus comes · GCF_013299755
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299755#G4366_RS00825Stable P2CS identifier used across views.
GenomeGCF_013299755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:150:1.12e-23:224:76:77- Raw architecture: Response_reg:5:7.93e-28:114:111:111#Trans_reg_C:150:1.12e-23:224:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299755::NZ_JAAIMN010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span180913-182773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4366_00825RefSeq proteinWP_008375063.1
Context group ID
GCF_013299755::NZ_JAAIMN010000001.1::G00017Context members
G4366_RS00820G4366_RS00825
Partner locus tags
G4366_RS00820G4366_RS00825
Partner old locus tags
G4366_00820G4366_00825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008375063.1Primary protein accession used for annex mappings.
UniProt accessionC0BBK6Primary UniProt accession resolved in the annex database.
UniProt IDC0BBK6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4366_RS00825Primary locus identifier stored in the genes table.
Old locus tagG4366_00825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMN010000001.1Sequence record reported by the local genomic context database.
Genomic interval182 060-182 773 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span180 913-182 773 ntGCF_013299755::NZ_JAAIMN010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299755::NZ_JAAIMN010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span180 913-182 773 nt1 861 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
180 913 nt182 773 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4366_RS00820GCF_013299755#G4366_RS00820
HKClassic
180 913-182 073 nt · Reverse (-)
G4366_RS00825GCF_013299755#G4366_RS00825
RROmpRCurrent focus
182 060-182 773 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406395#ARA05_RS02945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0964716
Simplified PFAM architecture for RROC_0964716
PFAM domain coverage: 183 / 237 aa (77.2%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_0964716
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_001406395#ARA05_RS02945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299755
AssemblyASM1329975v1 · Contighaploid
Genome composition3 230 682 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key