1 Response_reg#1
2-114 aa · 113 aa · 50.0% of protein
Raw token
Response_reg:2:1.8e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4412_RS15790
Response regulator OmpR family
Coprococcus comes · GCF_013299545
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299545#G4412_RS15790Stable P2CS identifier used across views.
GenomeGCF_013299545Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 226 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-220 aa · 73 aa · 32.3% of protein
Raw token
Trans_reg_C:148:8.95e-34:220:76:77- Raw architecture: Response_reg:2:1.8e-31:114:113:111#Trans_reg_C:148:8.95e-34:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299545::NZ_JAAILU010000027.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18353-20339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4412_15810RefSeq proteinWP_173687210.1
Context group ID
GCF_013299545::NZ_JAAILU010000027.1::G00027Context members
G4412_RS15790G4412_RS15795
Partner locus tags
G4412_RS15790G4412_RS15795
Partner old locus tags
G4412_15810G4412_15815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173687210.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4412_RS15790Primary locus identifier stored in the genes table.
Old locus tagG4412_15810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILU010000027.1Sequence record reported by the local genomic context database.
Genomic interval18 353-19 033 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 353-20 339 ntGCF_013299545::NZ_JAAILU010000027.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299545::NZ_JAAILU010000027.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILU010000027.1All displayed genes belong to this local TCS context.
Neighborhood span18 353-20 339 nt1 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 353 nt20 339 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4412_RS15790GCF_013299545#G4412_RS15790
RROmpRCurrent focus
18 353-19 033 nt · Forward (+)
G4412_RS15795GCF_013299545#G4412_RS15795
HKClassic
19 023-20 339 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299545#G4412_RS15790The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1428096
Simplified PFAM architecture for RROC_1428096
PFAM domain coverage: 186 / 226 aa (82.3%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1428096
- Positioned domains: Response_reg 2-114 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_013299545#G4412_RS15790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299545
AssemblyASM1329954v1 · Contighaploid
Genome composition3 372 884 bp · 43,0% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key