1 Response_reg#1
6-119 aa · 114 aa · 53.5% of protein
Raw token
Response_reg:6:9.49e-16:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4412_RS08610
Response regulator NarL family
Coprococcus comes · GCF_013299545
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013299545#G4412_RS08610Stable P2CS identifier used across views.
GenomeGCF_013299545Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 213 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
145-199 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:145:2.78e-17:199:55:58- Raw architecture: Response_reg:6:9.49e-16:119:114:111#HTH_LUXR:145:2.78e-17:199:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013299545::NZ_JAAILU010000008.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34234-34875Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4412_08605RefSeq proteinWP_173686672.1
Context group ID
GCF_013299545::NZ_JAAILU010000008.1::G00045Context members
G4412_RS08610
Partner locus tags
G4412_RS08610
Partner old locus tags
G4412_08605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173686672.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4412_RS08610Primary locus identifier stored in the genes table.
Old locus tagG4412_08605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILU010000008.1Sequence record reported by the local genomic context database.
Genomic interval34 234-34 875 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 234-34 875 ntGCF_013299545::NZ_JAAILU010000008.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299545::NZ_JAAILU010000008.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILU010000008.1All displayed genes belong to this local TCS context.
Neighborhood span34 234-34 875 nt642 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 234 nt34 875 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4412_RS08610GCF_013299545#G4412_RS08610
RRNarLCurrent focus
34 234-34 875 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299545#G4412_RS08610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1970983
Simplified PFAM architecture for RROC_1970983
PFAM domain coverage: 166 / 213 aa (77.9%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-118] | GerE[145-197]
- Domain count: 2
- Matched identifier: RROC_1970983
- Positioned domains: Response_reg 6-118 ; GerE 145-197
Cluster members and taxonomy
Representative gene: GCF_013299545#G4412_RS08610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299545
AssemblyASM1329954v1 · Contighaploid
Genome composition3 372 884 bp · 43,0% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key