1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:2.16e-26:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4412_RS06970
Response regulator OmpR family
Coprococcus comes · GCF_013299545
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299545#G4412_RS06970Stable P2CS identifier used across views.
GenomeGCF_013299545Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:150:1.42e-23:224:76:77- Raw architecture: Response_reg:5:2.16e-26:114:111:111#Trans_reg_C:150:1.42e-23:224:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299545::NZ_JAAILU010000006.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18166-20026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4412_06970RefSeq proteinWP_173686552.1
Context group ID
GCF_013299545::NZ_JAAILU010000006.1::G00042Context members
G4412_RS06970G4412_RS06975
Partner locus tags
G4412_RS06970G4412_RS06975
Partner old locus tags
G4412_06970G4412_06975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173686552.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4412_RS06970Primary locus identifier stored in the genes table.
Old locus tagG4412_06970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILU010000006.1Sequence record reported by the local genomic context database.
Genomic interval18 166-18 879 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 166-20 026 ntGCF_013299545::NZ_JAAILU010000006.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299545::NZ_JAAILU010000006.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILU010000006.1All displayed genes belong to this local TCS context.
Neighborhood span18 166-20 026 nt1 861 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 166 nt20 026 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4412_RS06970GCF_013299545#G4412_RS06970
RROmpRCurrent focus
18 166-18 879 nt · Forward (+)
G4412_RS06975GCF_013299545#G4412_RS06975
HKClassic
18 869-20 026 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299545#G4412_RS06970The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0971844
Simplified PFAM architecture for RROC_0971844
PFAM domain coverage: 183 / 237 aa (77.2%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_0971844
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_013299545#G4412_RS06970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299545
AssemblyASM1329954v1 · Contighaploid
Genome composition3 372 884 bp · 43,0% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key