1 Response_reg#1
4-114 aa · 111 aa · 50.2% of protein
Raw token
Response_reg:4:7.29e-30:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4412_RS01330
Response regulator OmpR family
Coprococcus comes · GCF_013299545
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299545#G4412_RS01330Stable P2CS identifier used across views.
GenomeGCF_013299545Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-215 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:146:1.58e-24:215:75:77- Raw architecture: Response_reg:4:7.29e-30:114:111:111#Trans_reg_C:146:1.58e-24:215:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299545::NZ_JAAILU010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247872-249448Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4412_01345RefSeq proteinWP_129873158.1
Context group ID
GCF_013299545::NZ_JAAILU010000001.1::G00017Context members
G4412_RS01325G4412_RS01330
Partner locus tags
G4412_RS01325G4412_RS01330
Partner old locus tags
G4412_01340G4412_01345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_129873158.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1FHW5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1FHW5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4412_RS01330Primary locus identifier stored in the genes table.
Old locus tagG4412_01345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILU010000001.1Sequence record reported by the local genomic context database.
Genomic interval248 783-249 448 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span247 872-249 448 ntGCF_013299545::NZ_JAAILU010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299545::NZ_JAAILU010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span247 872-249 448 nt1 577 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 872 nt249 448 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4412_RS01325GCF_013299545#G4412_RS01325
HKClassic
247 872-248 786 nt · Reverse (-)
G4412_RS01330GCF_013299545#G4412_RS01330
RROmpRCurrent focus
248 783-249 448 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167405#EAI90_RS12785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1688784
Simplified PFAM architecture for RROC_1688784
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-216]
- Domain count: 2
- Matched identifier: RROC_1688784
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-216 ; Trans_reg_C 149-216
Cluster members and taxonomy
Representative gene: GCF_004167405#EAI90_RS12785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299545
AssemblyASM1329954v1 · Contighaploid
Genome composition3 372 884 bp · 43,0% GCCoprococcus comes
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key