1 HAMP#1
211-280 aa · 70 aa · 11.7% of protein
Raw token
HAMP:211:0.00000000000000204:280:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HRD64_RS01690
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_013249115
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013249115#HRD64_RS01690Stable P2CS identifier used across views.
GenomeGCF_013249115Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 596 aa (48.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation3 items
2 HisKA#2
291-360 aa · 70 aa · 11.7% of protein
Raw token
HisKA:291:2.46e-16:360:70:643 HATPase_c#3
424-571 aa · 148 aa · 24.8% of protein
Raw token
HATPase_c:424:3.31e-20:571:148:109- Raw architecture: HAMP:211:0.00000000000000204:280:70:69#HisKA:291:2.46e-16:360:70:64#HATPase_c:424:3.31e-20:571:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013249115::NZ_JABRBW010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span383217-385813Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHRD64_01690RefSeq proteinWP_085347245.1
Context group ID
GCF_013249115::NZ_JABRBW010000001.1::G00005Context members
HRD64_RS01690HRD64_RS01695
Partner locus tags
HRD64_RS01690HRD64_RS01695
Partner old locus tags
HRD64_01690HRD64_01695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_085347245.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHRD64_RS01690Primary locus identifier stored in the genes table.
Old locus tagHRD64_01690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABRBW010000001.1Sequence record reported by the local genomic context database.
Genomic interval383 217-385 007 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span383 217-385 813 ntGCF_013249115::NZ_JABRBW010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013249115::NZ_JABRBW010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABRBW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span383 217-385 813 nt2 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
383 217 nt385 813 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HRD64_RS01690GCF_013249115#HRD64_RS01690
HKClassicCurrent focus
383 217-385 007 nt · Reverse (-)
HRD64_RS01695GCF_013249115#HRD64_RS01695
RROmpR
385 082-385 813 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108135#LMG10733_RS03195Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1074647
Simplified PFAM architecture for HKOC_1074647
PFAM domain coverage: 268 / 596 aa (45.0%)
1 aa596 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[228-280] | HisKA[292-360] | HATPase_c[424-569]
- Domain count: 3
- Matched identifier: HKOC_1074647
- Positioned domains: HAMP 228-280 ; HisKA 292-360 ; HATPase_c 424-569
Cluster members and taxonomy
Representative gene: GCF_002108135#LMG10733_RS03195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_013249115
AssemblyASM1324911v1 · Contighaploid
Genome composition2 063 860 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key