1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:2.19e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HRD64_RS01495
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_013249115
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013249115#HRD64_RS01495Stable P2CS identifier used across views.
GenomeGCF_013249115Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 869 aa (25.9%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000612:439:104:1093 HisKA_3#3
765-839 aa · 75 aa · 8.6% of protein
Raw token
HisKA_3:765:0.0000985:839:76:68- Raw architecture: HisKA_3:242:2.19e-18:304:63:68#HATPase_c:353:0.000000000000612:439:104:109#HisKA_3:765:0.0000985:839:76:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013249115::NZ_JABRBW010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span333767-337202Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHRD64_01495RefSeq proteinWP_011743040.1
Context group ID
GCF_013249115::NZ_JABRBW010000001.1::G00004Context members
HRD64_RS01495HRD64_RS01500
Partner locus tags
HRD64_RS01495HRD64_RS01500
Partner old locus tags
HRD64_01495HRD64_01500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011743040.1Primary protein accession used for annex mappings.
UniProt accessionA1A104Primary UniProt accession resolved in the annex database.
UniProt IDA1A104_BIFAADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHRD64_RS01495Primary locus identifier stored in the genes table.
Old locus tagHRD64_01495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABRBW010000001.1Sequence record reported by the local genomic context database.
Genomic interval333 767-336 376 nt2 610 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span333 767-337 202 ntGCF_013249115::NZ_JABRBW010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013249115::NZ_JABRBW010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABRBW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span333 767-337 202 nt3 436 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
333 767 nt337 202 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HRD64_RS01495GCF_013249115#HRD64_RS01495
HKClassicCurrent focus
333 767-336 376 nt · Forward (+)
HRD64_RS01500GCF_013249115#HRD64_RS01500
RRNarL
336 453-337 202 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS03225Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0459397
Simplified PFAM architecture for HKOC_0459397
PFAM domain coverage: 423 / 869 aa (48.7%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-687]
- Domain count: 4
- Matched identifier: HKOC_0459397
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-687
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS03225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_013249115
AssemblyASM1324911v1 · Contighaploid
Genome composition2 063 860 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key