1 Response_reg#1
15-122 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:15:4.27e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HNS28_RS06560
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_013204895
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013204895#HNS28_RS06560Stable P2CS identifier used across views.
GenomeGCF_013204895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 240 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 30.0% of protein
Raw token
Trans_reg_C:164:2.08e-30:235:77:77- Raw architecture: Response_reg:15:4.27e-36:122:109:111#Trans_reg_C:164:2.08e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013204895::NZ_JABNND010000013.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71972-73767Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHNS28_06555RefSeq proteinWP_012578060.1
Context group ID
GCF_013204895::NZ_JABNND010000013.1::G00002Context members
HNS28_RS06555HNS28_RS06560
Partner locus tags
HNS28_RS06555HNS28_RS06560
Partner old locus tags
HNS28_06550HNS28_06555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012578060.1Primary protein accession used for annex mappings.
UniProt accessionB7GT07Primary UniProt accession resolved in the annex database.
UniProt IDB7GT07_BIFLSDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHNS28_RS06560Primary locus identifier stored in the genes table.
Old locus tagHNS28_06555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABNND010000013.1Sequence record reported by the local genomic context database.
Genomic interval73 045-73 767 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 972-73 767 ntGCF_013204895::NZ_JABNND010000013.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013204895::NZ_JABNND010000013.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABNND010000013.1All displayed genes belong to this local TCS context.
Neighborhood span71 972-73 767 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 972 nt73 767 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HNS28_RS06555GCF_013204895#HNS28_RS06555
HKClassic
71 972-73 045 nt · Reverse (-)
HNS28_RS06560GCF_013204895#HNS28_RS06560
RROmpRCurrent focus
73 045-73 767 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS09145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882065
Simplified PFAM architecture for RROC_0882065
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0882065
- Positioned domains: Response_reg 15-122 ; Response_reg 15-122 ; Trans_reg_C 164-235 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS09145
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 107 total members. Page 1 / 3.
GCF_000020425#BLON_RS09145 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_013204895
AssemblyASM1320489v1 · Contighaploid
Genome composition2 568 669 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 12 · RR 22CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key