1 HisKA#1
148-211 aa · 64 aa · 17.3% of protein
Raw token
HisKA:148:0.0000000000000679:211:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HGQ82_RS02520
Histidine kinase, Classic
Clostridioides difficile · GCF_012956705
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_012956705#HGQ82_RS02520Stable P2CS identifier used across views.
GenomeGCF_012956705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 371 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
260-368 aa · 109 aa · 29.4% of protein
Raw token
HATPase_c:260:7.05e-25:368:110:109- Raw architecture: HisKA:148:0.0000000000000679:211:64:64#HATPase_c:260:7.05e-25:368:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_012956705::NZ_JABBZG010000003.1::G00043
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span88942-94667Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHGQ82_02520RefSeq proteinWP_102833934.1
Context group ID
GCF_012956705::NZ_JABBZG010000003.1::G00043Context members
HGQ82_RS02520HGQ82_RS02525HGQ82_RS02530HGQ82_RS02535HGQ82_RS02540
Partner locus tags
HGQ82_RS02520HGQ82_RS02525HGQ82_RS02530HGQ82_RS02535HGQ82_RS02540
Partner old locus tags
HGQ82_02520HGQ82_02525HGQ82_02530HGQ82_02535HGQ82_02540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_102833934.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHGQ82_RS02520Primary locus identifier stored in the genes table.
Old locus tagHGQ82_02520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABBZG010000003.1Sequence record reported by the local genomic context database.
Genomic interval88 942-90 057 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 942-94 667 ntGCF_012956705::NZ_JABBZG010000003.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012956705::NZ_JABBZG010000003.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABBZG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span88 942-94 667 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 942 nt94 667 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
HGQ82_RS02520GCF_012956705#HGQ82_RS02520
HKClassicCurrent focus
88 942-90 057 nt · Reverse (-)
HGQ82_RS02525GCF_012956705#HGQ82_RS02525
RROmpR
90 093-90 791 nt · Reverse (-)
HGQ82_RS02530GCF_012956705#HGQ82_RS02530
RROmpR
91 173-91 853 nt · Reverse (-)
HGQ82_RS02535GCF_012956705#HGQ82_RS02535
HKClassic
91 903-93 918 nt · Reverse (-)
HGQ82_RS02540GCF_012956705#HGQ82_RS02540
RROmpR
93 990-94 667 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891495#AMR93_RS04550Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2677237
Simplified PFAM architecture for HKOC_2677237
PFAM domain coverage: 174 / 371 aa (46.9%)
1 aa371 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[149-213] | HATPase_c[261-369]
- Domain count: 2
- Matched identifier: HKOC_2677237
- Positioned domains: HisKA 149-213 ; HATPase_c 261-369
Cluster members and taxonomy
Representative gene: GCF_002891495#AMR93_RS04550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012956705
AssemblyASM1295670v1 · Contighaploid
Genome composition4 080 613 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key