1 Response_reg#1
48-158 aa · 111 aa · 40.2% of protein
Raw token
Response_reg:48:2.6e-29:158:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HCN89_RS17780
Response regulator OmpR family
Clostridioides difficile · GCF_012952655
ClassRRTypeOmpRLength276 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_012952655#HCN89_RS17780Stable P2CS identifier used across views.
GenomeGCF_012952655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 276 aa (67.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
196-271 aa · 76 aa · 27.5% of protein
Raw token
Trans_reg_C:196:2.03e-28:271:76:77- Raw architecture: Response_reg:48:2.6e-29:158:112:111#Trans_reg_C:196:2.03e-28:271:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_012952655::NZ_JAATIE010000001.1::G00051
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3842782-3843612Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHCN89_17780RefSeq proteinWP_003417006.1
Context group ID
GCF_012952655::NZ_JAATIE010000001.1::G00051Context members
HCN89_RS17780
Partner locus tags
HCN89_RS17780
Partner old locus tags
HCN89_17780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417006.1Primary protein accession used for annex mappings.
UniProt accessionD5Q7D4Primary UniProt accession resolved in the annex database.
UniProt IDD5Q7D4_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHCN89_RS17780Primary locus identifier stored in the genes table.
Old locus tagHCN89_17780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATIE010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 842 782-3 843 612 nt831 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 842 782-3 843 612 ntGCF_012952655::NZ_JAATIE010000001.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012952655::NZ_JAATIE010000001.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATIE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 842 782-3 843 612 nt831 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 842 782 nt3 843 612 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HCN89_RS17780GCF_012952655#HCN89_RS17780
RROmpRCurrent focus
3 842 782-3 843 612 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164655#HMPREF0219_RS14065Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0602934
Simplified PFAM architecture for RROC_0602934
PFAM domain coverage: 186 / 276 aa (67.4%)
1 aa276 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[48-157] | Trans_reg_C[196-271]
- Domain count: 2
- Matched identifier: RROC_0602934
- Positioned domains: Response_reg 48-157 ; Response_reg 48-157 ; Trans_reg_C 196-271 ; Trans_reg_C 196-271
Cluster members and taxonomy
Representative gene: GCF_000164655#HMPREF0219_RS14065
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 306 total members. Page 1 / 7.
GCF_000164655#HMPREF0219_RS14065 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012952655
AssemblyASM1295265v1 · Contighaploid
Genome composition4 226 733 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key