1 HisKA_3#1
65-130 aa · 66 aa · 25.0% of protein
Raw token
HisKA_3:65:8.57e-21:130:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HCN89_RS07185
Histidine kinase, Classic
Clostridioides difficile · GCF_012952655
ClassHKTypeClassicLength264 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012952655#HCN89_RS07185Stable P2CS identifier used across views.
GenomeGCF_012952655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length264 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 264 aa (57.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa264 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
171-255 aa · 85 aa · 32.2% of protein
Raw token
HATPase_c:171:0.000000000639:255:104:109- Raw architecture: HisKA_3:65:8.57e-21:130:67:68#HATPase_c:171:0.000000000639:255:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012952655::NZ_JAATIE010000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1469461-1470895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHCN89_07185RefSeq proteinWP_254175655.1
Context group ID
GCF_012952655::NZ_JAATIE010000001.1::G00016Context members
HCN89_RS07180HCN89_RS07185
Partner locus tags
HCN89_RS07180HCN89_RS07185
Partner old locus tags
HCN89_07180HCN89_07185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254175655.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHCN89_RS07185Primary locus identifier stored in the genes table.
Old locus tagHCN89_07185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATIE010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 470 101-1 470 895 nt795 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 469 461-1 470 895 ntGCF_012952655::NZ_JAATIE010000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012952655::NZ_JAATIE010000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATIE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 469 461-1 470 895 nt1 435 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 469 461 nt1 470 895 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HCN89_RS07180GCF_012952655#HCN89_RS07180
RRNarL
1 469 461-1 470 108 nt · Reverse (-)
HCN89_RS07185GCF_012952655#HCN89_RS07185
HKClassicCurrent focus
1 470 101-1 470 895 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012952655#HCN89_RS07185The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2911021
Simplified PFAM architecture for HKOC_2911021
PFAM domain coverage: 150 / 264 aa (56.8%)
1 aa264 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[65-129] | HATPase_c[171-255]
- Domain count: 2
- Matched identifier: HKOC_2911021
- Positioned domains: HisKA_3 65-129 ; HATPase_c 171-255
Cluster members and taxonomy
Representative gene: GCF_012952655#HCN89_RS07185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012952655
AssemblyASM1295265v1 · Contighaploid
Genome composition4 226 733 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key