1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:4.25e-29:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ44_RS17350
Response regulator OmpR family
Clostridioides difficile · GCF_012276965
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012276965#GSQ44_RS17350Stable P2CS identifier used across views.
GenomeGCF_012276965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:2.21e-30:232:78:77- Raw architecture: Response_reg:12:4.25e-29:120:110:111#Trans_reg_C:155:2.21e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012276965::NZ_JAAXLO010000179.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3381-5337Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ44_17405RefSeq proteinWP_003438649.1
Context group ID
GCF_012276965::NZ_JAAXLO010000179.1::G00016Context members
GSQ44_RS17345GSQ44_RS17350
Partner locus tags
GSQ44_RS17345GSQ44_RS17350
Partner old locus tags
GSQ44_17400GSQ44_17405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003438649.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN6A4Z5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN6A4Z5_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ44_RS17350Primary locus identifier stored in the genes table.
Old locus tagGSQ44_17405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLO010000179.1Sequence record reported by the local genomic context database.
Genomic interval4 612-5 337 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 381-5 337 ntGCF_012276965::NZ_JAAXLO010000179.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276965::NZ_JAAXLO010000179.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLO010000179.1All displayed genes belong to this local TCS context.
Neighborhood span3 381-5 337 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 381 nt5 337 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ44_RS17345GCF_012276965#GSQ44_RS17345
HKClassic
3 381-4 634 nt · Reverse (-)
GSQ44_RS17350GCF_012276965#GSQ44_RS17350
RROmpRCurrent focus
4 612-5 337 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0209045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862776
Simplified PFAM architecture for RROC_0862776
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862776
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0209045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276965
AssemblyASM1227696v1 · Contighaploid
Genome composition4 129 981 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 93 · HK 43 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key