1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.00000000000171:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ42_RS11105
Histidine kinase, Classic
Clostridioides difficile · GCF_012276925
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012276925#GSQ42_RS11105Stable P2CS identifier used across views.
GenomeGCF_012276925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 468 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
357-466 aa · 110 aa · 23.5% of protein
Raw token
HATPase_c:357:5.81e-18:466:110:109- Raw architecture: HisKA:245:0.00000000000171:309:65:64#HATPase_c:357:5.81e-18:466:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012276925::NZ_JAAXLN010000101.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3207-5365Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ42_11145RefSeq proteinWP_095890677.1
Context group ID
GCF_012276925::NZ_JAAXLN010000101.1::G00001Context members
GSQ42_RS11105GSQ42_RS11110
Partner locus tags
GSQ42_RS11105GSQ42_RS11110
Partner old locus tags
GSQ42_11145GSQ42_11150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095890677.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ42_RS11105Primary locus identifier stored in the genes table.
Old locus tagGSQ42_11145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLN010000101.1Sequence record reported by the local genomic context database.
Genomic interval3 207-4 613 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 207-5 365 ntGCF_012276925::NZ_JAAXLN010000101.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276925::NZ_JAAXLN010000101.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLN010000101.1All displayed genes belong to this local TCS context.
Neighborhood span3 207-5 365 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 207 nt5 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ42_RS11105GCF_012276925#GSQ42_RS11105
HKClassicCurrent focus
3 207-4 613 nt · Reverse (-)
GSQ42_RS11110GCF_012276925#GSQ42_RS11110
RROmpR
4 658-5 365 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301765#BGU41_RS18040Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1739609
Simplified PFAM architecture for HKOC_1739609
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1739609
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_002301765#BGU41_RS18040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276925
AssemblyASM1227692v1 · Contighaploid
Genome composition4 122 348 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key