1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.52e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ42_RS10165
Response regulator OmpR family
Clostridioides difficile · GCF_012276925
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_012276925#GSQ42_RS10165Stable P2CS identifier used across views.
GenomeGCF_012276925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.26e-22:223:75:77- Raw architecture: Response_reg:5:1.52e-23:114:111:111#Trans_reg_C:150:2.26e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_012276925::NZ_JAAXLN010000085.1::G00059
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span1-3511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ42_10200RefSeq proteinWP_003432361.1
Context group ID
GCF_012276925::NZ_JAAXLN010000085.1::G00059Context members
GSQ42_RS10155GSQ42_RS10160GSQ42_RS10165
Partner locus tags
GSQ42_RS10155GSQ42_RS10160GSQ42_RS10165
Partner old locus tags
GSQ42_10190GSQ42_10195GSQ42_10200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003432361.1Primary protein accession used for annex mappings.
UniProt accessionQ180B0Primary UniProt accession resolved in the annex database.
UniProt IDQ180B0_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ42_RS10165Primary locus identifier stored in the genes table.
Old locus tagGSQ42_10200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLN010000085.1Sequence record reported by the local genomic context database.
Genomic interval2 831-3 511 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 511 ntGCF_012276925::NZ_JAAXLN010000085.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276925::NZ_JAAXLN010000085.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLN010000085.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 511 nt3 511 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 511 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
GSQ42_RS10155GCF_012276925#GSQ42_RS10155
RROmpR
1-694 nt · Forward (+)
GSQ42_RS10160GCF_012276925#GSQ42_RS10160
HKClassic
766-2 781 nt · Forward (+)
GSQ42_RS10165GCF_012276925#GSQ42_RS10165
RROmpRCurrent focus
2 831-3 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS17365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407979
Simplified PFAM architecture for RROC_1407979
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407979
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS17365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276925
AssemblyASM1227692v1 · Contighaploid
Genome composition4 122 348 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key