1 Response_reg#1
10-117 aa · 108 aa · 47.0% of protein
Raw token
Response_reg:10:5.27e-26:117:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ42_RS10155
Response regulator OmpR family
Clostridioides difficile · GCF_012276925
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_012276925#GSQ42_RS10155Stable P2CS identifier used across views.
GenomeGCF_012276925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:152:8.18e-30:228:77:77- Raw architecture: Response_reg:10:5.27e-26:117:109:111#Trans_reg_C:152:8.18e-30:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_012276925::NZ_JAAXLN010000085.1::G00059
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span1-3511Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ42_10190RefSeq proteinWP_236872310.1
Context group ID
GCF_012276925::NZ_JAAXLN010000085.1::G00059Context members
GSQ42_RS10155GSQ42_RS10160GSQ42_RS10165
Partner locus tags
GSQ42_RS10155GSQ42_RS10160GSQ42_RS10165
Partner old locus tags
GSQ42_10190GSQ42_10195GSQ42_10200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236872310.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ42_RS10155Primary locus identifier stored in the genes table.
Old locus tagGSQ42_10190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAXLN010000085.1Sequence record reported by the local genomic context database.
Genomic interval1-694 nt694 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 511 ntGCF_012276925::NZ_JAAXLN010000085.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012276925::NZ_JAAXLN010000085.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAXLN010000085.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 511 nt3 511 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 511 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
GSQ42_RS10155GCF_012276925#GSQ42_RS10155
RROmpRCurrent focus
1-694 nt · Forward (+)
GSQ42_RS10160GCF_012276925#GSQ42_RS10160
HKClassic
766-2 781 nt · Forward (+)
GSQ42_RS10165GCF_012276925#GSQ42_RS10165
RROmpR
2 831-3 511 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276925#GSQ42_RS10155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1216755
Simplified PFAM architecture for RROC_1216755
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-117] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1216755
- Positioned domains: Response_reg 10-117 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_012276925#GSQ42_RS10155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012276925
AssemblyASM1227692v1 · Contighaploid
Genome composition4 122 348 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key