1 Response_reg#1
4-120 aa · 117 aa · 49.6% of protein
Raw token
Response_reg:4:4.18e-22:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ40_RS01160
Response regulator LytTR family
Clostridioides difficile · GCF_012102905
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_012102905#GSQ40_RS01160Stable P2CS identifier used across views.
GenomeGCF_012102905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-225 aa · 85 aa · 36.0% of protein
Raw token
LytTR:141:9.69e-18:225:92:98- Raw architecture: Response_reg:4:4.18e-22:120:119:111#LytTR:141:9.69e-18:225:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_012102905::NZ_JAAVTQ010000002.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6010-6720Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ40_01165RefSeq proteinWP_167808335.1
Context group ID
GCF_012102905::NZ_JAAVTQ010000002.1::G00026Context members
GSQ40_RS01160
Partner locus tags
GSQ40_RS01160
Partner old locus tags
GSQ40_01165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167808335.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ40_RS01160Primary locus identifier stored in the genes table.
Old locus tagGSQ40_01165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAVTQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval6 010-6 720 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 010-6 720 ntGCF_012102905::NZ_JAAVTQ010000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012102905::NZ_JAAVTQ010000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAVTQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span6 010-6 720 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 010 nt6 720 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GSQ40_RS01160GCF_012102905#GSQ40_RS01160
RRLytTRCurrent focus
6 010-6 720 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012102905#GSQ40_RS01160The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0998848
Simplified PFAM architecture for RROC_0998848
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[142-225]
- Domain count: 2
- Matched identifier: RROC_0998848
- Positioned domains: Response_reg 4-119 ; LytTR 142-225
Cluster members and taxonomy
Representative gene: GCF_012102905#GSQ40_RS01160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012102905
AssemblyASM1210290v1 · Contighaploid
Genome composition4 302 196 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 53 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key