1 HisKA_3#1
188-251 aa · 64 aa · 16.5% of protein
Raw token
HisKA_3:188:5.05e-20:251:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ43_RS10260
Histidine kinase, Classic
Clostridioides difficile · GCF_012030175
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012030175#GSQ43_RS10260Stable P2CS identifier used across views.
GenomeGCF_012030175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 387 aa (38.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa387 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-378 aa · 85 aa · 22.0% of protein
Raw token
HATPase_c:294:0.0000000000983:378:104:109- Raw architecture: HisKA_3:188:5.05e-20:251:65:68#HATPase_c:294:0.0000000000983:378:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012030175::NZ_JAAUXG010000054.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18796-20599Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ43_10240RefSeq proteinWP_167654336.1
Context group ID
GCF_012030175::NZ_JAAUXG010000054.1::G00040Context members
GSQ43_RS10260GSQ43_RS10265
Partner locus tags
GSQ43_RS10260GSQ43_RS10265
Partner old locus tags
GSQ43_10240GSQ43_10245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167654336.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ43_RS10260Primary locus identifier stored in the genes table.
Old locus tagGSQ43_10240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAUXG010000054.1Sequence record reported by the local genomic context database.
Genomic interval18 796-19 959 nt1 164 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 796-20 599 ntGCF_012030175::NZ_JAAUXG010000054.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012030175::NZ_JAAUXG010000054.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAUXG010000054.1All displayed genes belong to this local TCS context.
Neighborhood span18 796-20 599 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 796 nt20 599 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ43_RS10260GCF_012030175#GSQ43_RS10260
HKClassicCurrent focus
18 796-19 959 nt · Forward (+)
GSQ43_RS10265GCF_012030175#GSQ43_RS10265
RRNarL
19 952-20 599 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012030175#GSQ43_RS10260The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2552157
Simplified PFAM architecture for HKOC_2552157
PFAM domain coverage: 149 / 387 aa (38.5%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-251] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2552157
- Positioned domains: HisKA_3 188-251 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_012030175#GSQ43_RS10260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012030175
AssemblyASM1203017v1 · Contighaploid
Genome composition4 172 576 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key