1 HAMP#1
6-74 aa · 69 aa · 16.1% of protein
Raw token
HAMP:6:0.000000244:74:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ43_RS04710
Histidine kinase, Classic
Clostridioides difficile · GCF_012030175
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012030175#GSQ43_RS04710Stable P2CS identifier used across views.
GenomeGCF_012030175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage340 / 429 aa (79.3%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation4 items
2 PAS_9#2
96-195 aa · 100 aa · 23.3% of protein
Raw token
PAS_9:96:0.00000117:195:103:1023 HisKA#3
202-268 aa · 67 aa · 15.6% of protein
Raw token
HisKA:202:2.76e-18:268:67:644 HATPase_c#4
319-422 aa · 104 aa · 24.2% of protein
Raw token
HATPase_c:319:3.5e-30:422:104:109- Raw architecture: HAMP:6:0.000000244:74:69:69#PAS_9:96:0.00000117:195:103:102#HisKA:202:2.76e-18:268:67:64#HATPase_c:319:3.5e-30:422:104:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012030175::NZ_JAAUXG010000018.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19158-21168Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ43_04695RefSeq proteinWP_003426968.1
Context group ID
GCF_012030175::NZ_JAAUXG010000018.1::G00017Context members
GSQ43_RS04705GSQ43_RS04710
Partner locus tags
GSQ43_RS04705GSQ43_RS04710
Partner old locus tags
GSQ43_04690GSQ43_04695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003426968.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3NE71Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3NE71_CLODCDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ43_RS04710Primary locus identifier stored in the genes table.
Old locus tagGSQ43_04695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAUXG010000018.1Sequence record reported by the local genomic context database.
Genomic interval19 879-21 168 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 158-21 168 ntGCF_012030175::NZ_JAAUXG010000018.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012030175::NZ_JAAUXG010000018.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAUXG010000018.1All displayed genes belong to this local TCS context.
Neighborhood span19 158-21 168 nt2 011 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 158 nt21 168 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ43_RS04705GCF_012030175#GSQ43_RS04705
RROmpR
19 158-19 850 nt · Forward (+)
GSQ43_RS04710GCF_012030175#GSQ43_RS04710
HKClassicCurrent focus
19 879-21 168 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0213315Use this link to inspect the representative gene detail.
PFAM architectureHAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2180212
Simplified PFAM architecture for HKOC_2180212
PFAM domain coverage: 324 / 429 aa (75.5%)
1 aa429 aa
HAMPPASHisKAHATPase_c
- Simplified architecture: HAMP + PAS + HisKA + HATPase_c
- Raw architecture: HAMP[30-74] | PAS[87-193] | HisKA[202-267] | HATPase_c[317-422]
- Domain count: 4
- Matched identifier: HKOC_2180212
- Positioned domains: HAMP 30-74 ; PAS 87-193 ; HisKA 202-267 ; HATPase_c 317-422
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0213315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012030175
AssemblyASM1203017v1 · Contighaploid
Genome composition4 172 576 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key