1 HisKA_3#1
130-193 aa · 64 aa · 19.5% of protein
Raw token
HisKA_3:130:3.61e-20:193:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ35_RS16990
Histidine kinase, Classic
Clostridioides difficile · GCF_012029905
ClassHKTypeClassicLength329 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012029905#GSQ35_RS16990Stable P2CS identifier used across views.
GenomeGCF_012029905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length329 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 329 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa329 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
236-320 aa · 85 aa · 25.8% of protein
Raw token
HATPase_c:236:0.0000000000885:320:104:109- Raw architecture: HisKA_3:130:3.61e-20:193:65:68#HATPase_c:236:0.0000000000885:320:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012029905::NZ_JAATWN010000096.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1632Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ35_16990RefSeq proteinWP_167653972.1
Context group ID
GCF_012029905::NZ_JAATWN010000096.1::G00054Context members
GSQ35_RS16990GSQ35_RS16995
Partner locus tags
GSQ35_RS16990GSQ35_RS16995
Partner old locus tags
GSQ35_16990GSQ35_16995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167653972.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ35_RS16990Primary locus identifier stored in the genes table.
Old locus tagGSQ35_16990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATWN010000096.1Sequence record reported by the local genomic context database.
Genomic interval1-992 nt992 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 632 ntGCF_012029905::NZ_JAATWN010000096.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012029905::NZ_JAATWN010000096.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATWN010000096.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 632 nt1 632 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 632 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ35_RS16990GCF_012029905#GSQ35_RS16990
HKClassicCurrent focus
1-992 nt · Forward (+)
GSQ35_RS16995GCF_012029905#GSQ35_RS16995
RRNarL
985-1 632 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS06390Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550383
Simplified PFAM architecture for HKOC_2550383
PFAM domain coverage: 149 / 387 aa (38.5%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-251] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550383
- Positioned domains: HisKA_3 188-251 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS06390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012029905
AssemblyASM1202990v1 · Contighaploid
Genome composition4 045 570 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key