1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000477:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ35_RS15510
Histidine kinase, Classic
Clostridioides difficile · GCF_012029905
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_012029905#GSQ35_RS15510Stable P2CS identifier used across views.
GenomeGCF_012029905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 671 aa (25.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
567-668 aa · 102 aa · 15.2% of protein
Raw token
HATPase_c:567:1.43e-29:668:102:109- Raw architecture: HisKA:449:0.00000000477:514:66:64#HATPase_c:567:1.43e-29:668:102:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_012029905::NZ_JAATWN010000074.1::G00044
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span15475-18969Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ35_15505RefSeq proteinWP_045146397.1
Context group ID
GCF_012029905::NZ_JAATWN010000074.1::G00044Context members
GSQ35_RS15505GSQ35_RS15510GSQ35_RS15515
Partner locus tags
GSQ35_RS15505GSQ35_RS15510GSQ35_RS15515
Partner old locus tags
GSQ35_15500GSQ35_15505GSQ35_15510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_045146397.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ35_RS15510Primary locus identifier stored in the genes table.
Old locus tagGSQ35_15505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATWN010000074.1Sequence record reported by the local genomic context database.
Genomic interval16 205-18 220 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 475-18 969 ntGCF_012029905::NZ_JAATWN010000074.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012029905::NZ_JAATWN010000074.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATWN010000074.1All displayed genes belong to this local TCS context.
Neighborhood span15 475-18 969 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 475 nt18 969 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
GSQ35_RS15505GCF_012029905#GSQ35_RS15505
RROmpR
15 475-16 155 nt · Reverse (-)
GSQ35_RS15510GCF_012029905#GSQ35_RS15510
HKClassicCurrent focus
16 205-18 220 nt · Reverse (-)
GSQ35_RS15515GCF_012029905#GSQ35_RS15515
RROmpR
18 292-18 969 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704795#DCQ01_RS09510Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842874
Simplified PFAM architecture for HKOC_0842874
PFAM domain coverage: 168 / 671 aa (25.0%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[565-667]
- Domain count: 2
- Matched identifier: HKOC_0842874
- Positioned domains: HisKA 450-514 ; HATPase_c 565-667
Cluster members and taxonomy
Representative gene: GCF_001704795#DCQ01_RS09510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012029905
AssemblyASM1202990v1 · Contighaploid
Genome composition4 045 570 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key