1 Response_reg#1
7-102 aa · 96 aa · 40.9% of protein
Raw token
Response_reg:7:0.000000158:102:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ35_RS06730
Response regulator LytTR family
Clostridioides difficile · GCF_012029905
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_012029905#GSQ35_RS06730Stable P2CS identifier used across views.
GenomeGCF_012029905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 235 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-234 aa · 95 aa · 40.4% of protein
Raw token
LytTR:140:0.00000000000000173:234:100:98- Raw architecture: Response_reg:7:0.000000158:102:96:111#LytTR:140:0.00000000000000173:234:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_012029905::NZ_JAATWN010000017.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span56252-56959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ35_06730RefSeq proteinWP_167653872.1
Context group ID
GCF_012029905::NZ_JAATWN010000017.1::G00009Context members
GSQ35_RS06730
Partner locus tags
GSQ35_RS06730
Partner old locus tags
GSQ35_06730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167653872.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ35_RS06730Primary locus identifier stored in the genes table.
Old locus tagGSQ35_06730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATWN010000017.1Sequence record reported by the local genomic context database.
Genomic interval56 252-56 959 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 252-56 959 ntGCF_012029905::NZ_JAATWN010000017.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012029905::NZ_JAATWN010000017.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATWN010000017.1All displayed genes belong to this local TCS context.
Neighborhood span56 252-56 959 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 252 nt56 959 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GSQ35_RS06730GCF_012029905#GSQ35_RS06730
RRLytTRCurrent focus
56 252-56 959 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012029905#GSQ35_RS06730The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1027945
Simplified PFAM architecture for RROC_1027945
PFAM domain coverage: 92 / 235 aa (39.1%)
1 aa235 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[142-233]
- Domain count: 1
- Matched identifier: RROC_1027945
- Positioned domains: LytTR 142-233
Cluster members and taxonomy
Representative gene: GCF_012029905#GSQ35_RS06730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_012029905
AssemblyASM1202990v1 · Contighaploid
Genome composition4 045 570 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key