1 HisKA#1
244-312 aa · 69 aa · 14.7% of protein
Raw token
HisKA:244:0.000000000000253:312:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ25_RS13130
Histidine kinase, Classic
Clostridioides difficile · GCF_011882285
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_011882285#GSQ25_RS13130Stable P2CS identifier used across views.
GenomeGCF_011882285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 469 aa (38.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa469 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
359-468 aa · 110 aa · 23.5% of protein
Raw token
HATPase_c:359:1.33e-26:468:110:109- Raw architecture: HisKA:244:0.000000000000253:312:69:64#HATPase_c:359:1.33e-26:468:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_011882285::NZ_JAATNI010000445.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span14847-16258Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ25_13150RefSeq proteinWP_207713398.1
Context group ID
GCF_011882285::NZ_JAATNI010000445.1::G00038Context members
GSQ25_RS13130
Partner locus tags
GSQ25_RS13130
Partner old locus tags
GSQ25_13150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207713398.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ25_RS13130Primary locus identifier stored in the genes table.
Old locus tagGSQ25_13150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATNI010000445.1Sequence record reported by the local genomic context database.
Genomic interval14 847-16 258 nt1 412 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 847-16 258 ntGCF_011882285::NZ_JAATNI010000445.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011882285::NZ_JAATNI010000445.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATNI010000445.1All displayed genes belong to this local TCS context.
Neighborhood span14 847-16 258 nt1 412 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 847 nt16 258 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GSQ25_RS13130GCF_011882285#GSQ25_RS13130
HKClassicCurrent focus
14 847-16 258 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003327385#DVA95_RS07180Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1719326
Simplified PFAM architecture for HKOC_1719326
PFAM domain coverage: 172 / 470 aa (36.6%)
1 aa470 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-306] | HATPase_c[360-469]
- Domain count: 2
- Matched identifier: HKOC_1719326
- Positioned domains: HisKA 245-306 ; HATPase_c 360-469
Cluster members and taxonomy
Representative gene: GCF_003327385#DVA95_RS07180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_011882285
AssemblyASM1188228v1 · Contighaploid
Genome composition4 105 453 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key