1 Response_reg#1
6-118 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:6:2.73e-28:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ25_RS09920
Response regulator NarL family
Clostridioides difficile · GCF_011882285
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_011882285#GSQ25_RS09920Stable P2CS identifier used across views.
GenomeGCF_011882285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 215 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-207 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:153:4.06e-21:207:55:58- Raw architecture: Response_reg:6:2.73e-28:118:113:111#HTH_LUXR:153:4.06e-21:207:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_011882285::NZ_JAATNI010000322.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8624-10062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ25_09935RefSeq proteinWP_133145661.1
Context group ID
GCF_011882285::NZ_JAATNI010000322.1::G00025Context members
GSQ25_RS09920GSQ25_RS09925
Partner locus tags
GSQ25_RS09920GSQ25_RS09925
Partner old locus tags
GSQ25_09935GSQ25_09940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_133145661.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ25_RS09920Primary locus identifier stored in the genes table.
Old locus tagGSQ25_09935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATNI010000322.1Sequence record reported by the local genomic context database.
Genomic interval8 624-9 271 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 624-10 062 ntGCF_011882285::NZ_JAATNI010000322.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011882285::NZ_JAATNI010000322.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATNI010000322.1All displayed genes belong to this local TCS context.
Neighborhood span8 624-10 062 nt1 439 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 624 nt10 062 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ25_RS09920GCF_011882285#GSQ25_RS09920
RRNarLCurrent focus
8 624-9 271 nt · Reverse (-)
GSQ25_RS09925GCF_011882285#GSQ25_RS09925
HKClassic
9 264-10 062 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_011882285#GSQ25_RS09920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1916555
Simplified PFAM architecture for RROC_1916555
PFAM domain coverage: 168 / 215 aa (78.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1916555
- Positioned domains: Response_reg 6-117 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_011882285#GSQ25_RS09920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_011882285
AssemblyASM1188228v1 · Contighaploid
Genome composition4 105 453 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key