1 HisKA#1
245-309 aa · 65 aa · 14.1% of protein
Raw token
HisKA:245:0.00000000000157:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ25_RS06720
Histidine kinase, Classic
Clostridioides difficile · GCF_011882285
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_011882285#GSQ25_RS06720Stable P2CS identifier used across views.
GenomeGCF_011882285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 460 aa (36.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
357-457 aa · 101 aa · 22.0% of protein
Raw token
HATPase_c:357:6.34e-16:457:101:109- Raw architecture: HisKA:245:0.00000000000157:309:65:64#HATPase_c:357:6.34e-16:457:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_011882285::NZ_JAATNI010000225.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2606-4736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ25_06735RefSeq proteinWP_167649021.1
Context group ID
GCF_011882285::NZ_JAATNI010000225.1::G00018Context members
GSQ25_RS06715GSQ25_RS06720
Partner locus tags
GSQ25_RS06715GSQ25_RS06720
Partner old locus tags
GSQ25_06730GSQ25_06735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167649021.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ25_RS06720Primary locus identifier stored in the genes table.
Old locus tagGSQ25_06735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATNI010000225.1Sequence record reported by the local genomic context database.
Genomic interval3 358-4 736 nt1 379 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 606-4 736 ntGCF_011882285::NZ_JAATNI010000225.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011882285::NZ_JAATNI010000225.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATNI010000225.1All displayed genes belong to this local TCS context.
Neighborhood span2 606-4 736 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 606 nt4 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ25_RS06715GCF_011882285#GSQ25_RS06715
RROmpR
2 606-3 313 nt · Forward (+)
GSQ25_RS06720GCF_011882285#GSQ25_RS06720
HKClassicCurrent focus
3 358-4 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038752455#AA6Y74_RS04575Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1744719
Simplified PFAM architecture for HKOC_1744719
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1744719
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_038752455#AA6Y74_RS04575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_011882285
AssemblyASM1188228v1 · Contighaploid
Genome composition4 105 453 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key