1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:6.96e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ25_RS04190
Response regulator OmpR family
Clostridioides difficile · GCF_011882285
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_011882285#GSQ25_RS04190Stable P2CS identifier used across views.
GenomeGCF_011882285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:3.95e-28:227:77:77- Raw architecture: Response_reg:4:6.96e-33:112:111:111#Trans_reg_C:151:3.95e-28:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_011882285::NZ_JAATNI010000156.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19164-21299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ25_04195RefSeq proteinWP_003434748.1
Context group ID
GCF_011882285::NZ_JAATNI010000156.1::G00008Context members
GSQ25_RS04190GSQ25_RS04195
Partner locus tags
GSQ25_RS04190GSQ25_RS04195
Partner old locus tags
GSQ25_04195GSQ25_04200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003434748.1Primary protein accession used for annex mappings.
UniProt accessionQ188S4Primary UniProt accession resolved in the annex database.
UniProt IDQ188S4_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ25_RS04190Primary locus identifier stored in the genes table.
Old locus tagGSQ25_04195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATNI010000156.1Sequence record reported by the local genomic context database.
Genomic interval19 164-19 856 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 164-21 299 ntGCF_011882285::NZ_JAATNI010000156.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011882285::NZ_JAATNI010000156.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATNI010000156.1All displayed genes belong to this local TCS context.
Neighborhood span19 164-21 299 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 164 nt21 299 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ25_RS04190GCF_011882285#GSQ25_RS04190
RROmpRCurrent focus
19 164-19 856 nt · Forward (+)
GSQ25_RS04195GCF_011882285#GSQ25_RS04195
HKClassic
19 875-21 299 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199614
Simplified PFAM architecture for RROC_1199614
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1199614
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_011882285
AssemblyASM1188228v1 · Contighaploid
Genome composition4 105 453 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key