1 HisKA#1
22-75 aa · 54 aa · 23.0% of protein
Raw token
HisKA:22:0.00000136:75:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ29_RS20265
Histidine kinase, Classic
Clostridioides difficile · GCF_011881455
ClassHKTypeClassicLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_011881455#GSQ29_RS20265Stable P2CS identifier used across views.
GenomeGCF_011881455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 235 aa (70.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
121-231 aa · 111 aa · 47.2% of protein
Raw token
HATPase_c:121:5.87e-21:231:111:109- Raw architecture: HisKA:22:0.00000136:75:60:64#HATPase_c:121:5.87e-21:231:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_011881455::NZ_JAATNP010000634.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-708Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ29_17470RefSeq proteinWP_207712167.1
Context group ID
GCF_011881455::NZ_JAATNP010000634.1::G00046Context members
GSQ29_RS20265
Partner locus tags
GSQ29_RS20265
Partner old locus tags
GSQ29_17470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207712167.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ29_RS20265Primary locus identifier stored in the genes table.
Old locus tagGSQ29_17470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATNP010000634.1Sequence record reported by the local genomic context database.
Genomic interval1-708 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-708 ntGCF_011881455::NZ_JAATNP010000634.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011881455::NZ_JAATNP010000634.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATNP010000634.1All displayed genes belong to this local TCS context.
Neighborhood span1-708 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt708 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GSQ29_RS20265GCF_011881455#GSQ29_RS20265
HKClassicCurrent focus
1-708 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS14880Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2848218
Simplified PFAM architecture for HKOC_2848218
PFAM domain coverage: 110 / 335 aa (32.8%)
1 aa335 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-330]
- Domain count: 1
- Matched identifier: HKOC_2848218
- Positioned domains: HATPase_c 221-330
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS14880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_011881455
AssemblyASM1188145v1 · Contighaploid
Genome composition4 018 598 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 48CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key