1 Response_reg#1
5-114 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:5:7.83e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ29_RS14690
Response regulator OmpR family
Clostridioides difficile · GCF_011881455
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_011881455#GSQ29_RS14690Stable P2CS identifier used across views.
GenomeGCF_011881455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.4% of protein
Raw token
Trans_reg_C:157:7.2e-31:233:77:77- Raw architecture: Response_reg:5:7.83e-34:114:111:111#Trans_reg_C:157:7.2e-31:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_011881455::NZ_JAATNP010000544.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4798-5514Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ29_14660RefSeq proteinWP_021422482.1
Context group ID
GCF_011881455::NZ_JAATNP010000544.1::G00036Context members
GSQ29_RS14690
Partner locus tags
GSQ29_RS14690
Partner old locus tags
GSQ29_14660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ29_RS14690Primary locus identifier stored in the genes table.
Old locus tagGSQ29_14660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATNP010000544.1Sequence record reported by the local genomic context database.
Genomic interval4 798-5 514 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 798-5 514 ntGCF_011881455::NZ_JAATNP010000544.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011881455::NZ_JAATNP010000544.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATNP010000544.1All displayed genes belong to this local TCS context.
Neighborhood span4 798-5 514 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 798 nt5 514 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GSQ29_RS14690GCF_011881455#GSQ29_RS14690
RROmpRCurrent focus
4 798-5 514 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS06870Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0934134
Simplified PFAM architecture for RROC_0934134
PFAM domain coverage: 186 / 238 aa (78.2%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[157-232]
- Domain count: 2
- Matched identifier: RROC_0934134
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 157-232 ; Trans_reg_C 157-232
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS06870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_011881455
AssemblyASM1188145v1 · Contighaploid
Genome composition4 018 598 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 48CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key