1 HisKA#1
262-327 aa · 66 aa · 13.6% of protein
Raw token
HisKA:262:0.00000000402:327:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ29_RS06610
Histidine kinase, Classic
Clostridioides difficile · GCF_011881455
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_011881455#GSQ29_RS06610Stable P2CS identifier used across views.
GenomeGCF_011881455Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 484 aa (35.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
378-481 aa · 104 aa · 21.5% of protein
Raw token
HATPase_c:378:3.48e-30:481:104:109- Raw architecture: HisKA:262:0.00000000402:327:66:64#HATPase_c:378:3.48e-30:481:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_011881455::NZ_JAATNP010000228.1::G00015
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span12813-17227Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ29_06585RefSeq proteinWP_167625656.1
Context group ID
GCF_011881455::NZ_JAATNP010000228.1::G00015Context members
GSQ29_RS06595GSQ29_RS06600GSQ29_RS06605GSQ29_RS06610
Partner locus tags
GSQ29_RS06595GSQ29_RS06600GSQ29_RS06605GSQ29_RS06610
Partner old locus tags
GSQ29_06570GSQ29_06575GSQ29_06580GSQ29_06585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167625656.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ29_RS06610Primary locus identifier stored in the genes table.
Old locus tagGSQ29_06585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATNP010000228.1Sequence record reported by the local genomic context database.
Genomic interval15 773-17 227 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 813-17 227 ntGCF_011881455::NZ_JAATNP010000228.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011881455::NZ_JAATNP010000228.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATNP010000228.1All displayed genes belong to this local TCS context.
Neighborhood span12 813-17 227 nt4 415 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 813 nt17 227 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
GSQ29_RS06595GCF_011881455#GSQ29_RS06595
HKClassic
12 813-13 928 nt · Reverse (-)
GSQ29_RS06600GCF_011881455#GSQ29_RS06600
RROmpR
13 964-14 662 nt · Reverse (-)
GSQ29_RS06605GCF_011881455#GSQ29_RS06605
RROmpR
15 043-15 723 nt · Reverse (-)
GSQ29_RS06610GCF_011881455#GSQ29_RS06610
HKClassicCurrent focus
15 773-17 227 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS17370Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842424
Simplified PFAM architecture for HKOC_0842424
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842424
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS17370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_011881455
AssemblyASM1188145v1 · Contighaploid
Genome composition4 018 598 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 48CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key