1 Response_reg#1
4-115 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:4:2.84e-35:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GSQ21_RS01945
Response regulator OmpR family
Clostridioides difficile · GCF_011812885
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_011812885#GSQ21_RS01945Stable P2CS identifier used across views.
GenomeGCF_011812885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-228 aa · 74 aa · 31.9% of protein
Raw token
Trans_reg_C:155:8.55e-35:228:74:77- Raw architecture: Response_reg:4:2.84e-35:115:113:111#Trans_reg_C:155:8.55e-35:228:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_011812885::NZ_JAATKX010000090.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2956-4574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGSQ21_01945RefSeq proteinWP_002347245.1
Context group ID
GCF_011812885::NZ_JAATKX010000090.1::G00001Context members
GSQ21_RS01945GSQ21_RS01950
Partner locus tags
GSQ21_RS01945GSQ21_RS01950
Partner old locus tags
GSQ21_01945GSQ21_01950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002347245.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TFU3Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TFU3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGSQ21_RS01945Primary locus identifier stored in the genes table.
Old locus tagGSQ21_01945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAATKX010000090.1Sequence record reported by the local genomic context database.
Genomic interval2 956-3 654 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 956-4 574 ntGCF_011812885::NZ_JAATKX010000090.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_011812885::NZ_JAATKX010000090.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAATKX010000090.1All displayed genes belong to this local TCS context.
Neighborhood span2 956-4 574 nt1 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 956 nt4 574 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GSQ21_RS01945GCF_011812885#GSQ21_RS01945
RROmpRCurrent focus
2 956-3 654 nt · Forward (+)
GSQ21_RS01950GCF_011812885#GSQ21_RS01950
HKClassic
3 657-4 574 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0116835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120360
Simplified PFAM architecture for RROC_1120360
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1120360
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 155-228 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0116835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_011812885
AssemblyASM1181288v1 · Contighaploid
Genome composition4 122 150 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 47 · RR 48CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key