1 Response_reg#1
53-132 aa · 80 aa · 36.7% of protein
Raw token
Response_reg:53:0.0000000000909:132:80:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F6S85_RS07540
Response regulator NarL family
Bifidobacterium dentium · GCF_010667545
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_010667545#F6S85_RS07540Stable P2CS identifier used across views.
GenomeGCF_010667545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage127 / 218 aa (58.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-204 aa · 47 aa · 21.6% of protein
Raw token
HTH_LUXR:158:0.000000000000513:204:47:58- Raw architecture: Response_reg:53:0.0000000000909:132:80:111#HTH_LUXR:158:0.000000000000513:204:47:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_010667545::NZ_VYSD01000007.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21694-22350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF6S85_07615RefSeq proteinWP_034520822.1
Context group ID
GCF_010667545::NZ_VYSD01000007.1::G00016Context members
F6S85_RS07540
Partner locus tags
F6S85_RS07540
Partner old locus tags
F6S85_07615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_034520822.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2UYC0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2UYC0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF6S85_RS07540Primary locus identifier stored in the genes table.
Old locus tagF6S85_07615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VYSD01000007.1Sequence record reported by the local genomic context database.
Genomic interval21 694-22 350 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 694-22 350 ntGCF_010667545::NZ_VYSD01000007.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010667545::NZ_VYSD01000007.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VYSD01000007.1All displayed genes belong to this local TCS context.
Neighborhood span21 694-22 350 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 694 nt22 350 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
F6S85_RS07540GCF_010667545#F6S85_RS07540
RRNarLCurrent focus
21 694-22 350 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010667545#F6S85_RS07540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1823492
Simplified PFAM architecture for RROC_1823492
PFAM domain coverage: 133 / 218 aa (61.0%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[47-131] | GerE[157-204]
- Domain count: 2
- Matched identifier: RROC_1823492
- Positioned domains: Response_reg 47-131 ; Response_reg 47-131 ; GerE 157-204 ; GerE 157-204
Cluster members and taxonomy
Representative gene: GCF_010667545#F6S85_RS07540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 689 · GCF_010667545
AssemblyASM1066754v1 · Scaffoldhaploid
Genome composition2 513 129 bp · 58,5% GCBifidobacterium dentium
Signal transduction countsGenes 38 · HK 16 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key