1 Response_reg#1
7-120 aa · 114 aa · 22.5% of protein
Raw token
Response_reg:7:2.8e-30:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS13540
Response regulator, unclassified
Amedibacterium intestinale · GCF_010537155
ClassRRTypeunclassifiedLength506 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS13540Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 506 aa (37.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa506 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
413-454 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:413:0.000066:454:42:423 HTH_AraC#3
470-501 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:470:0.000000202:501:32:42- Raw architecture: Response_reg:7:2.8e-30:120:114:111#HTH_AraC:413:0.000066:454:42:42#HTH_AraC:470:0.000000202:501:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2686485-2689471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_26570RefSeq proteinWP_118276958.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00024Context members
Aargi30884_RS13535Aargi30884_RS13540
Partner locus tags
Aargi30884_RS13535Aargi30884_RS13540
Partner old locus tags
Aargi30884_26560Aargi30884_26570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118276958.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TMQ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TMQ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS13540Primary locus identifier stored in the genes table.
Old locus tagAargi30884_26570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval2 687 951-2 689 471 nt1 521 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 686 485-2 689 471 ntGCF_010537155::NZ_AP019695.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span2 686 485-2 689 471 nt2 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 686 485 nt2 689 471 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS13535GCF_010537155#Aargi30884_RS13535
HKClassic
2 686 485-2 687 936 nt · Forward (+)
Aargi30884_RS13540GCF_010537155#Aargi30884_RS13540
RRunclassifiedCurrent focus
2 687 951-2 689 471 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS13540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0151506
Simplified PFAM architecture for RROC_0151506
PFAM domain coverage: 190 / 506 aa (37.5%)
1 aa506 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[7-119] | HTH_18[427-503]
- Domain count: 2
- Matched identifier: RROC_0151506
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; HTH_18 427-503 ; HTH_18 427-503
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS13540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key