1 His_kinase#1
283-362 aa · 80 aa · 16.6% of protein
Raw token
His_kinase:283:1.59e-29:362:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS13535
Histidine kinase, Classic
Amedibacterium intestinale · GCF_010537155
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS13535Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 483 aa (37.5%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
381-481 aa · 101 aa · 20.9% of protein
Raw token
HATPase_c:381:0.0000000000118:481:106:109- Raw architecture: His_kinase:283:1.59e-29:362:80:80#HATPase_c:381:0.0000000000118:481:106:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2686485-2689471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_26560RefSeq proteinWP_118276959.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00024Context members
Aargi30884_RS13535Aargi30884_RS13540
Partner locus tags
Aargi30884_RS13535Aargi30884_RS13540
Partner old locus tags
Aargi30884_26560Aargi30884_26570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118276959.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TLY2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TLY2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS13535Primary locus identifier stored in the genes table.
Old locus tagAargi30884_26560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval2 686 485-2 687 936 nt1 452 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 686 485-2 689 471 ntGCF_010537155::NZ_AP019695.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span2 686 485-2 689 471 nt2 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 686 485 nt2 689 471 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS13535GCF_010537155#Aargi30884_RS13535
HKClassicCurrent focus
2 686 485-2 687 936 nt · Forward (+)
Aargi30884_RS13540GCF_010537155#Aargi30884_RS13540
RRunclassified
2 687 951-2 689 471 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS13535The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1596724
Simplified PFAM architecture for HKOC_1596724
PFAM domain coverage: 179 / 483 aa (37.1%)
1 aa483 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[283-362] | HATPase_c[381-479]
- Domain count: 2
- Matched identifier: HKOC_1596724
- Positioned domains: His_kinase 283-362 ; HATPase_c 381-479
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS13535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key