1 HAMP#1
154-225 aa · 72 aa · 15.9% of protein
Raw token
HAMP:154:0.000000000656:225:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS11150
Histidine kinase, Classic
Amedibacterium intestinale · GCF_010537155
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS11150Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 454 aa (54.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-295 aa · 65 aa · 14.3% of protein
Raw token
HisKA:231:0.000000000000245:295:65:643 HATPase_c#3
340-447 aa · 108 aa · 23.8% of protein
Raw token
HATPase_c:340:1e-25:447:108:109- Raw architecture: HAMP:154:0.000000000656:225:72:69#HisKA:231:0.000000000000245:295:65:64#HATPase_c:340:1e-25:447:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2209365-2211400Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_21850RefSeq proteinWP_115716204.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00019Context members
Aargi30884_RS11150Aargi30884_RS11155
Partner locus tags
Aargi30884_RS11150Aargi30884_RS11155
Partner old locus tags
Aargi30884_21850Aargi30884_21860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_115716204.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TMI3Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TMI3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS11150Primary locus identifier stored in the genes table.
Old locus tagAargi30884_21850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval2 209 365-2 210 729 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 209 365-2 211 400 ntGCF_010537155::NZ_AP019695.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span2 209 365-2 211 400 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 209 365 nt2 211 400 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS11150GCF_010537155#Aargi30884_RS11150
HKClassicCurrent focus
2 209 365-2 210 729 nt · Reverse (-)
Aargi30884_RS11155GCF_010537155#Aargi30884_RS11155
RROmpR
2 210 726-2 211 400 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS11150The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1916418
Simplified PFAM architecture for HKOC_1916418
PFAM domain coverage: 229 / 454 aa (50.4%)
1 aa454 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-225] | HisKA[231-295] | HATPase_c[340-448]
- Domain count: 3
- Matched identifier: HKOC_1916418
- Positioned domains: HAMP 171-225 ; HisKA 231-295 ; HATPase_c 340-448
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS11150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key