1 dCache_1#1
28-235 aa · 208 aa · 39.1% of protein
Raw token
dCache_1:28:0.00000417:235:216:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS10010
Histidine kinase, Classic
Amedibacterium intestinale · GCF_010537155
ClassHKTypeClassicLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS10010Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage461 / 532 aa (86.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation4 items
2 HAMP#2
245-310 aa · 66 aa · 12.4% of protein
Raw token
HAMP:245:0.00000298:310:66:693 His_kinase#3
330-409 aa · 80 aa · 15.0% of protein
Raw token
His_kinase:330:3.97e-30:409:80:804 HATPase_c#4
420-526 aa · 107 aa · 20.1% of protein
Raw token
HATPase_c:420:0.000000000043:526:117:109- Raw architecture: dCache_1:28:0.00000417:235:216:195#HAMP:245:0.00000298:310:66:69#His_kinase:330:3.97e-30:409:80:80#HATPase_c:420:0.000000000043:526:117:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1948567-1951753Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_19610RefSeq proteinWP_163052164.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00017Context members
Aargi30884_RS10005Aargi30884_RS10010
Partner locus tags
Aargi30884_RS10005Aargi30884_RS10010
Partner old locus tags
Aargi30884_19600Aargi30884_19610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_163052164.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS10010Primary locus identifier stored in the genes table.
Old locus tagAargi30884_19610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval1 950 155-1 951 753 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 948 567-1 951 753 ntGCF_010537155::NZ_AP019695.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span1 948 567-1 951 753 nt3 187 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 948 567 nt1 951 753 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS10005GCF_010537155#Aargi30884_RS10005
RRunclassified
1 948 567-1 950 162 nt · Reverse (-)
Aargi30884_RS10010GCF_010537155#Aargi30884_RS10010
HKClassicCurrent focus
1 950 155-1 951 753 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS10010The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1349546
Simplified PFAM architecture for HKOC_1349546
PFAM domain coverage: 178 / 532 aa (33.5%)
1 aa532 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[331-407] | HATPase_c[425-525]
- Domain count: 2
- Matched identifier: HKOC_1349546
- Positioned domains: His_kinase 331-407 ; HATPase_c 425-525
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS10010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key