1 Response_reg#1
4-118 aa · 115 aa · 21.7% of protein
Raw token
Response_reg:4:2.67e-29:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS10005
Response regulator, unclassified
Amedibacterium intestinale · GCF_010537155
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS10005Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 531 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
425-466 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:425:0.000000000181:466:42:423 HTH_AraC#3
480-516 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:480:0.00000000294:516:37:42- Raw architecture: Response_reg:4:2.67e-29:118:115:111#HTH_AraC:425:0.000000000181:466:42:42#HTH_AraC:480:0.00000000294:516:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1948567-1951753Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_19600RefSeq proteinWP_158572274.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00017Context members
Aargi30884_RS10005Aargi30884_RS10010
Partner locus tags
Aargi30884_RS10005Aargi30884_RS10010
Partner old locus tags
Aargi30884_19600Aargi30884_19610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158572274.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TJZ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TJZ9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS10005Primary locus identifier stored in the genes table.
Old locus tagAargi30884_19600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval1 948 567-1 950 162 nt1 596 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 948 567-1 951 753 ntGCF_010537155::NZ_AP019695.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span1 948 567-1 951 753 nt3 187 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 948 567 nt1 951 753 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS10005GCF_010537155#Aargi30884_RS10005
RRunclassifiedCurrent focus
1 948 567-1 950 162 nt · Reverse (-)
Aargi30884_RS10010GCF_010537155#Aargi30884_RS10010
HKClassic
1 950 155-1 951 753 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS10005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110240
Simplified PFAM architecture for RROC_0110240
PFAM domain coverage: 194 / 531 aa (36.5%)
1 aa531 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-118] | HTH_AraC[425-466] | HTH_AraC[480-516]
- Domain count: 3
- Matched identifier: RROC_0110240
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; HTH_AraC 425-466 ; HTH_AraC 425-466 ; HTH_AraC 480-516 ; HTH_AraC 480-516
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS10005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key