1 Response_reg#1
4-115 aa · 112 aa · 50.5% of protein
Raw token
Response_reg:4:1.57e-32:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS09180
Response regulator NarL family
Amedibacterium intestinale · GCF_010537155
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS09180Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 222 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
157-212 aa · 56 aa · 25.2% of protein
Raw token
HTH_LUXR:157:3.4e-17:212:56:58- Raw architecture: Response_reg:4:1.57e-32:115:112:111#HTH_LUXR:157:3.4e-17:212:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1772341-1774316Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_17980RefSeq proteinWP_118277411.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00015Context members
Aargi30884_RS09180Aargi30884_RS09185
Partner locus tags
Aargi30884_RS09180Aargi30884_RS09185
Partner old locus tags
Aargi30884_17980Aargi30884_17990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118277411.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TKF4Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TKF4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS09180Primary locus identifier stored in the genes table.
Old locus tagAargi30884_17980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval1 772 341-1 773 009 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 772 341-1 774 316 ntGCF_010537155::NZ_AP019695.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span1 772 341-1 774 316 nt1 976 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 772 341 nt1 774 316 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS09180GCF_010537155#Aargi30884_RS09180
RRNarLCurrent focus
1 772 341-1 773 009 nt · Reverse (-)
Aargi30884_RS09185GCF_010537155#Aargi30884_RS09185
HKClassic
1 773 009-1 774 316 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS09180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1650808
Simplified PFAM architecture for RROC_1650808
PFAM domain coverage: 167 / 222 aa (75.2%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[158-212]
- Domain count: 2
- Matched identifier: RROC_1650808
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 158-212 ; GerE 158-212
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS09180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key